Development of a software platform for analysis of nonribosomal peptides

Nonribosomal peptides are molecules produced by microorganisms and displaying a broad spectrum of biological activities and pharmaceutical applications. They can harbor anti-microbial, immunomodulating or anti-tumor activities. These peptides are synthesized by huge multi-enzymatic complexes, called NonRibosomal Peptide Synthetases. Two main structural traits distinguish these peptides from the ribosomally synthesized ones : first, their primary structure is not always linear but is often cyclic (partially or totally), branched or poly-cyclic, and second, the diversity of monomers incorporated into nonribosomal peptides extends far beyond the 20 proteogenic amino acids residues. We have developed Norine, the first public resource entirely dedicated to nonribosomal peptides. Norine currently contains more than 1 000 peptides, modeled by non-oriented labeled graphs, and computational tools allowing their analysis, such as monomer composition comparison, structural pattern matching or similarity search. Statistical analysis of Norine data highlighted interesting biological properties such as a specific monomer composition depending on the biological activity, that led us to develop a tool for helping the prediction of peptide activity from its monomeric composition. In three years, Norine became the international resource for nonribosomal peptides.

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Field Value
Source https://theses.hal.science/tel-00823447
Author Caboche, Ségolène
Maintainer CCSD
Last Updated May 11, 2026, 02:52 (UTC)
Created May 11, 2026, 02:52 (UTC)
Identifier tel-00823447
Language fr
Rights https://about.hal.science/hal-authorisation-v1/
contributor Laboratoire des Procédés Biologiques Génie Enzymatique et Microbien (PROBIOGEM) ; Université de Lille, Sciences et Technologies-Fédération Universitaire et Polytechnique de Lille
creator Caboche, Ségolène
date 2009-09-08T00:00:00
harvest_object_id 72acbbe7-a46a-4889-b2c4-d014220947d7
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2025-02-26T00:00:00
set_spec type:THESE