Imaging the neuronal activity from the whole brain of a zebrafish using selective plane illumination microscopy

One third of the manuscript deals with the design of a set-up to deliver tactile stimulation to a human subject. Using microneurography, we recorded the neural response of the mecanoreceptors during a controlled stimulation. The set-up provides precise control over the position, the orientation, the speed and the loading force of a stimulus that we machined on a micro-mill. Thus we can study the transduction of the information, from initially contained in the surface geometry up to the neural coding. The second part shows the construction of Single Plane Illumination Microscope designed to record the neuronal activity of a zebrafish larva. We aim at recording the whole chain of transmission from the sensor to the brain. The fish are genetically modified to express the GCaMP3 calcium indicator in each of their neurons. With the SPIM, where the excitation light comes from the side of the specimen in the shape of a lightsheet and the observation is made from the top at a 90 degrees angle, we can increase the frame rate and the size of the field of view simultaneously, compared to usual techniques (confocal or 2-photons microscopes). These improvements are used to study the correlations between signals from neurons distributed all over the larva?s brain, and discover the underlying networks.

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Source https://theses.hal.science/tel-00979762
Author Panier, Thomas
Maintainer CCSD
Last Updated May 5, 2026, 14:27 (UTC)
Created May 5, 2026, 14:27 (UTC)
Identifier NNT: 2014PA066032
Language fr
Rights https://about.hal.science/hal-authorisation-v1/
contributor Laboratoire Jean Perrin (LJP) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut de Biologie Paris Seine (IBPS) ; Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
creator Panier, Thomas
date 2014-01-20T00:00:00
harvest_object_id 137fdffa-704c-4ad9-9e75-86eee56e1dc5
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2026-04-10T00:00:00
set_spec type:THESE