The PhD (CIFRE fundings) was supported by a partnership between three actors: ENSTA Bretagne, IRISA and Thales Air Systems. The latter's concerns, and more precisely the ones from the affiliation team, are to build embedded software-intensive systems. The complexity of these systems, combined to the need of competitivity, reveal the notion of Model-Based Product Lines (MBPLs). They make a synergy of the capabilities of modeling and product line approaches, and enable more efficient solutions for modularization with the distinction of abstraction levels and separation of concerns. Besides, the dynamic nature of real-world systems induces that product line models need to evolve continually to meet new customer requirements and to reflect changes in product line artifacts. The aim of the thesis is to handle the increments of evolution of complex systems product lines, the contributions to achieve it are twofolds. The thesis claims that i) a multidimensional variability and a relational modeling are required within a complex system product line in order to enhance comprehension and ease the PL evolution (Conceptual model modularization framework and PliMoS Domain Specific Modeling Language proposition; the language is dedicated to relational and intentional expressions in MBPLs), and that ii) specialization efforts during product derivation have to be guided by a conceptual architecture (architectural patterns on top of PLiMoS, e.g.~ABCDE) and capitalized within a semi-automatic tooled process allowing the incremental PL evolution by extension.