Development of statistical methods for genetic data analysis : identification of genetic polymorphisms potentially involved in skin aging

New technologies developed recently in the field of genetic have generated high-dimensional databases, especially SNPs databases. These databases are often characterized by a number of variables much larger than the number of individuals. The goal of this dissertation was to develop appropriate statistical methods to analyse high-dimensional data, and to select the most biologically relevant variables. In the first part, I present the state of the art that describes unsupervised and supervised variables selection methods for two or more blocks of variables. In the second part, I present two new unsupervised "sparse" methods: Group Sparse Principal Component Analysis (GSPCA) and Sparse Multiple Correspondence Analysis (Sparse MCA). Considered as regression problems with a group LASSO penalization, these methods lead to select blocks of quantitative and qualitative variables, respectively. The third part is devoted to interactions between SNPs. A method employed to identify these interactions is presented: the logic regression. Finally, the last part presents an application of these methods on a real SNPs dataset to study the possible influence of genetic polymorphism on facial skin aging in adult women. The methods developed gave relevant results that confirmed the biologist's expectations and that offered new research perspectives.

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Source https://theses.hal.science/tel-00925074
Author Bernard, Anne
Maintainer CCSD
Last Updated May 6, 2026, 05:04 (UTC)
Created May 6, 2026, 05:04 (UTC)
Identifier NNT: 2013CNAM0882
Language fr
Rights https://about.hal.science/hal-authorisation-v1/
contributor Centre d'études et de recherche en informatique et communications (CEDRIC) ; Ecole Nationale Supérieure d'Informatique pour l'Industrie et l'Entreprise (ENSIIE)-Conservatoire National des Arts et Métiers [Cnam] (Cnam)
creator Bernard, Anne
date 2013-12-20T00:00:00
harvest_object_id 3117b442-f4f7-49c6-9fb9-3f4ea2061405
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2026-03-31T00:00:00
set_spec type:THESE