Methodology for the extraction and the analysis of gene regulation networks : analysis of the transcriptional response to irradiation in S. cerevisiæ

The cellular response to the DNA damage provoked by irradiation (IR) is relatively well studied, however, many observations show the involvement of the expression of many genes. We propose to identify the different potential patterns of the transcriptional response to IR and to reconstruct a gene regulatory network involved in its control. The first point of this work lies in the exploitation of the gene expression dynamics in conditions of genetic perturbations. The second point lies in the integration of systemic biological informations. We define an approach composed of one step of automated logical deduction of regulations from a strategy of perturbations and two induction steps that allow the analysis of the gene expression dynamics and the extraction of potential regulation from additional data. This approach allowed to identify, for the yeast, a complex response to IR and allowed to propose a regulation model which some relations have been experimentally validated.

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Source https://theses.hal.science/tel-00877095
Author Touleimat, Nizar
Maintainer CCSD
Last Updated May 9, 2026, 06:02 (UTC)
Created May 9, 2026, 06:02 (UTC)
Identifier tel-00877095
Language fr
Rights https://about.hal.science/hal-authorisation-v1/
contributor Informatique, Biologie Intégrative et Systèmes Complexes (IBISC) ; Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
creator Touleimat, Nizar
date 2008-11-26T00:00:00
harvest_object_id 452c0887-470c-4201-8fd5-ddefc4c21fe5
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2025-08-12T00:00:00
set_spec type:THESE