In a protocol-based Web service composition, a set of available component services collaborate together in order to provide a new composite service. Services export their protocols as finite state machines (FSMs). A transition in the FSM represents a task execution that makes the service moving to a next state. An execution of the composite corresponds to a sequence of transitions where each task is delegated to a component service. During composite run, one or more delegated components may become unavailable due to hard or soft problems on the Network. This unavailability may result in a failed execution of the composite. We provide in this thesis a formal study of the automatic recovery problem in the protocol-based Web service composition. Recovery consists in transforming the failed execution into a recovery execution. Such a transformation is performed by compensating some transitions and executing some others. The recovery execution is an alternative execution of the composite that still has the ability to reach a final state. The recovery problem consists then in finding the best recovery execution(s) among those available. The best recovery execution is attainable from the failed execution with a minimal number of visible compensations with respect to the client. For a given recovery execution, we prove that the decision problem associated with computing the number of invisibly-compensated transitions is NP-complete. Thus, we conclude that deciding of the best recovery execution is in ΣP2.