Stochastic modelling using large data sets : applications in ecology and genetics

There are two main parts in this thesis. The first one concerns valvometry, which is here the study of the distance between both parts of the shell of an oyster, over time. The health status of oysters can be characterized using valvometry in order to obtain insights about the quality of their environment. We consider that a renewal process with four states underlies the behaviour of the studied oysters. Such a hidden process can be retrieved from a valvometric signal by assuming that some probability density function linked with this signal, is bimodal. We then compare several estimators which take this assumption into account, including kernel density estimators.In another chapter, we compare several regression approaches, aiming at analysing transcriptomic data. To understand which explanatory variables have an effect on gene expressions, we apply a multiple testing procedure on these data, through the linear model FAMT. The SIR method may find nonlinear relations in such a context. It is however more commonly used when the response variable is univariate. A multivariate version of SIR was then developed. Procedures to measure gene expressions can be expensive. The sample size n of the corresponding datasets is then often small. That is why we also studied SIR when n is less than the number of explanatory variables p.

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Additional Info

Field Value
Source https://theses.hal.science/tel-00865867
Author Coudret, Raphaël
Maintainer CCSD
Last Updated May 9, 2026, 14:57 (UTC)
Created May 9, 2026, 14:57 (UTC)
Identifier NNT: 2013BOR14838
Language en
Rights https://about.hal.science/hal-authorisation-v1/
contributor Institut de Mathématiques de Bordeaux (IMB) ; Université de Bordeaux (UB)-Institut Polytechnique de Bordeaux (Bordeaux INP)-Centre National de la Recherche Scientifique (CNRS)
creator Coudret, Raphaël
date 2013-09-16T00:00:00
harvest_object_id 5fbd04ed-b472-4fda-8327-38e04ebe9c93
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2026-03-31T00:00:00
set_spec type:THESE