One of most problematic in the aeronautical industries is the structural joining of the high performance thermoplastic composites like PEEK composites. Actually, a lot of technologies are used for joining thermoplastic composites like welding, bolting, riveting, fastening and adhesive bonding. Due to the various advantages that characterize the adhesive bonding method, such an uniform stress distribution along the joint, weight‐light and cost reduction, makes this technique more desirable to join thermoplastic composites materials compared to the other joining techniques. PEEK (PolyEtherEtherKetone) is a semi‐crystalline thermoplastic material with high performance. This material is wildly used in aeronautical industries, principally, reinforced with carbon of glass fibres. However, its high chemical resistance makes the adhesive bonding of PEEK and its composites difficult and therefore an appropriate and optimised surface treatment is necessary. In the aim to obtain a bonded system with high performance, scientific and technical problematic should be focussed on the junction between adherents. Indeed, the quality of this junction is of utmost importance because it must allow optimum transfer of thermomechanical stresses when the assembly is subject to its terms of use. Though, at this time it is well known that thermoplastic composite materials are difficult to bond with‐out surface treatment. This study, therefore, relates to the improvement of mechanical properties (monotonic and cyclic) of the adhesive bonding system PEEK / PEEK. In this context, a surface treatment, easy to implement, is proposed. This surface treatment is sandblasting, which enables surface topographic (morphological) modifications. Understanding of various phenomena of interfaces interaction involved in the improvement of the mechanical behavior of the adhesive joint and is part of the triptych "Rheology, Physico‐chemistry and topography" is the major scientific challenge in this thesis. Initially, the influence of processing parameters such as the projection time, the particle size on surface morphology of various materials based on PEEK was analysed, thus allowing establishing the correlation between morphological parameters and modification mechanisms involved during surface treatment surface. One of the key factors for understanding the mechanisms of interaction between the liquid adhesive and the solid substrate is wettability. The analysis of the wetting behavior as a function of various parameters of the treatment was performed. The wettability of treated surfaces is strongly affected by surface roughness created after this treatment. The relationship between morphological parameters and wettability was discussed. Finally, the influence of sandblasting processing parameters on the mechanical behavior in monotoning and long‐term (fatigue tests) of the adhesive joint strength was studied, using single lap shear tests specimens. This has led to the proposal of specific surface morphological parameters for the optimization of the mechanical behavior of the adhesive joint of PEEK and its composites.