In this work we used motor and cognitive tasks in an fMRI study to explore the early cortical reorganizations of the motor and extra-motor circuits in ALS patients. In a first part, using a simple motor task, we demonstrated (1) that increased cortical BOLD signal changes occurred in specific regions of the brain of ALS patients when their motor deficit was still moderate, and that this early signal changes correlated with (2) the lateralisation of the motor deficit or hand predominance and, more importantly, (3) with the rate of disease progression at one year and survival time, suggesting that modulations of cerebral activity in ALS may have functional implications. Furthermore, (4) this brain plasticity was maintained with time and disease progression during at least eleven months. In a second part, we demonstrated during a silent verbal fluency task (1) that ALS patients presented initially an increased cortical activation of areas devolved to the semantic process with an intensification of the functional network connectivity (FNC). (2) After eleven months and while their performance in tests of verbal fluency was stable, this cerebral compensation ran out with a decrease of the previous cerebral activations and the FNC. A N-back working memory paradigm, realized while the patients did not present any deficit of their working memory, allowed us to show that certain non-motor circuits were reorganized prematurely while patients were still asymptomatic