Crystallographic study of the proteins NikA and NikR implied in the nickel transport in Escherichia coli.<br />When the NikA structure hints at a possible new metallophore.

Nickel is an essential cofactor for several proteins found in bacteria, but it is also toxic at high concentrations. Consequently, microorganisms need a highly regulated and specific import system of Ni2+. In Escherichia coli, this system is composed of five proteins encoded by the nikabcde operon (which is an ATP Binding Casette): NikA, a periplamic protein, NikB and NikC, two transmembrane proteins which create a pore in the inner membrane, and the cytoplasmic proteins NikD and NikE, which hydrolyse ATP and provide the energy for the transport process. FNR (Fumarate Nitrate Regulator) is the activator, and NikR the repressor of the transcription of the nik operon. We solved the NikA protein structure by molecular replacement and found that contrary to what was reported in a previous crystallographic analysis, the protein doesn't bind a pentahydrate nickel, but an FeEDTA(H2O)- complex. The EDTA, that is not a natural molecule, was introduced during the periplasmic extraction. These results suggest that NikA does not fix nickel directly, but it does it through a natural metallophore. Indeed, when we changed the periplasmic extraction with EDTA to a protocol using chloroform, we obtained a new structure where the nickel in complexed to a molecule similar to EDTA. Since this seems to be the physiological metallophore we have tried to characterise it using a variety of techniques. We also report a preliminary crystallographic analysis of NikR

Data and Resources

Additional Info

Field Value
Source https://theses.hal.science/tel-00079162
Author Cherrier, Mickael V
Maintainer CCSD
Last Updated May 14, 2026, 07:28 (UTC)
Created May 14, 2026, 07:28 (UTC)
Identifier tel-00079162
Language fr
Rights https://about.hal.science/hal-authorisation-v1/
contributor Institut de biologie structurale (IBS - UMR 5075) ; Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG) ; Direction de Recherche Fondamentale (CEA) (DRF (CEA)) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) ; Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
creator Cherrier, Mickael V
date 2006-05-05T00:00:00
harvest_object_id da7d6176-4484-4a79-86a6-0dc2dd1fcac1
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2025-09-27T00:00:00
set_spec type:THESE