Nonparametric estimation of the density of the alternative hypothesis in a multiple testing setup. Application to local false discovery rate estimation

In a multiple testing context, we consider a semiparametric mixture model with two components where one component is known and corresponds to the distribution of $p$-values under the null hypothesis and the other component $f$ is nonparametric and stands for the distribution under the alternative hypothesis. Motivated by the issue of local false discovery rate estimation, we focus here on the estimation of the nonparametric unknown component $f$ in the mixture, relying on a preliminary estimator of the unknown proportion $\theta$ of true null hypotheses. We propose and study the asymptotic properties of two different estimators for this unknown component. The first estimator is a randomly weighted kernel estimator. We establish an upper bound for its pointwise quadratic risk, exhibiting the classical nonparametric rate of convergence over a class of Hölder densities. To our knowledge, this is the first result establishing convergence as well as corresponding rate for the estimation of the unknown component in this nonparametric mixture. The second estimator is a maximum smoothed likelihood estimator. It is computed through an iterative algorithm, for which we establish a descent property. In addition, these estimators are used in a multiple testing procedure in order to estimate the local false discovery rate. Their respective performances are then compared on synthetic data.

Data and Resources

Additional Info

Field Value
Source ISSN: 1292-8100
Author Nguyen, van Hanh, Matias, Catherine
Maintainer CCSD
Last Updated May 11, 2026, 18:57 (UTC)
Created May 11, 2026, 18:57 (UTC)
Identifier hal-00738555
Language en
Rights https://about.hal.science/hal-authorisation-v1/
contributor Laboratoire Statistique et Génome (LSG) ; Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
creator Nguyen, van Hanh
date 2014-10-15T00:00:00
harvest_object_id 3982b1a8-4b7e-436b-a7df-dae511676711
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2025-04-17T00:00:00
relation https://hal.inrae.fr/hal-02633692v1
set_spec type:ART