Complete backtranslation of oligopeptides for metabolic pathways exploration of complex environments using functional microarrays

When studying complex environments where the composing microorganisms are unknown, exploratory tools able to tackle with the biological diversity have to be proposed. DNA microarrays can be a good answer if we are in a position to propose all the probes that could target a specific enzyme. In addition, in the context of new metabolic pathways discovery, it appears that a full backtranslation of oligopeptides is also a promising approach. In both contexts it is preferable to have all the complete nucleic sequences corresponding to an enzyme of interest. In this paper, we revisit existing bioinformatics applications, which bring partial reverse translation solutions, and we propose an algorithm based on input oligopeptide degeneracy able to efficiently compute a complete backtranslation of oligopeptides. This algorithm is precious for the discovery of new organisms and we show its performance on simulated and real biological datasets.

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Source PROCEEDINGS OF THE 7TH IEEE INTERNATIONAL SYMPOSIUM ON BIOINFORMATICS AND BIOENGINEERING, VOLS I AND II
Author Missaoui, Mohieddine, Hill, David R.C., Militon, Cécile, Peyret, Pierre
Maintainer CCSD
Last Updated May 16, 2026, 01:35 (UTC)
Created May 16, 2026, 01:35 (UTC)
Identifier hal-00704699
Language en
contributor Laboratoire d'Informatique, de Modélisation et d'optimisation des Systèmes (LIMOS) ; Université Blaise Pascal - Clermont-Ferrand 2 (UBP)-Université d'Auvergne - Clermont-Ferrand I (UdA)-SIGMA Clermont (SIGMA Clermont)-Ecole Nationale Supérieure des Mines de St Etienne (ENSM ST-ETIENNE)-Centre National de la Recherche Scientifique (CNRS)
coverage Boston (MA), France
creator Missaoui, Mohieddine
date 2007-10-14T00:00:00
harvest_object_id 5eecd17d-801a-47fd-b81b-b8fa30439e70
harvest_source_id 3374d638-d20b-4672-ba96-a23232d55657
harvest_source_title test moissonnage SELUNE
metadata_modified 2026-01-14T00:00:00
set_spec type:COMM